open3SPN2 Documentation

open3SPN2 implements the 3SPN2 and 3SPN2.C forcefields in openmm. This library is intended to be used for DNA simulations and DNA-protein simulations.

Contents:

• Installation
  • Requirements
  • From source code
  • From conda
• Tutorial
  • DNA from sequence
  • Protein DNA system
• Classes and functions
  • DNA
  • System
  • DNA Forces
  • DNA - Protein Forces
  • Utils
  • Tests
  • Exceptions

Indices and tables

• Index

• Module Index

• Search Page