Index
_
|
A
|
B
|
C
|
D
|
E
|
F
|
G
|
P
|
S
|
T
|
W
_
__init__() (open3SPN2.System method)
A
Angle (class in open3SPN2)
B
BasePair (class in open3SPN2)
Bond (class in open3SPN2)
C
CoarseGrain() (open3SPN2.DNA static method)
computeGeometry() (open3SPN2.DNA method)
computeTopology() (open3SPN2.DNA method)
CrossStacking (class in open3SPN2)
D
Dihedral (class in open3SPN2)
DNA (class in open3SPN2)
DNATypeError (class in open3SPN2)
E
Electrostatics (class in open3SPN2)
ElectrostaticsProteinDNA (class in open3SPN2)
Exclusion (class in open3SPN2)
ExclusionProteinDNA (class in open3SPN2)
F
Feynman
fixPDB() (in module open3SPN2)
fromCoarsePDB() (open3SPN2.DNA class method)
fromPDB() (open3SPN2.DNA class method)
fromSequence() (open3SPN2.DNA class method)
fromXYZ() (open3SPN2.DNA class method)
G
getSequences() (open3SPN2.DNA method)
P
parseConfigTable() (in module open3SPN2)
parseConfigurationFile() (open3SPN2.DNA method)
parsePDB() (in module open3SPN2)
pdb2table() (in module open3SPN2)
S
Stacking (class in open3SPN2)
System (class in open3SPN2)
T
test_DNA_from_xyz() (in module open3SPN2)
test_parse_log() (in module open3SPN2)
test_parse_xyz() (in module open3SPN2)
TestEnergies (class in open3SPN2)
W
writePDB() (open3SPN2.DNA method)
open3SPN2
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